[gmx-users] y-axis [unit] for gmx analyze -dist command

atb files atbfiles at zoho.com
Tue Jul 10 09:29:54 CEST 2018


            Thanks Justin for the answer. Sorry, but I couldn’t understand your answer. What I can guess is may be gmx analyze is taking the entry from time series data and putting in appropriate bin, now every bin has some value which is a “integer”, now is there any further division with some number to these integer values?Thanks Yogi Sent using Zoho Mail---- On Mon, 09 Jul 2018 21:24:30 +0530  Justin Lemkul<jalemkul at vt.edu> wrote ----  On 7/9/18 11:38 AM, atb files wrote: > Dear users, I have two time series data files - a.xvg and b.xvg. I ran command gmx analyze -f a.xvg -dist aout.xvg gmx analyze -f b.xvg -dist bout.xvg y values for aout.xvg ranges from 0 to 0.05 and that for bout.xvg from 0 to 40, both plots are similar to the gaussian distribution. What are these plot? is it a probability distribution? then  According to gmx help analyze:  Option -dist produces distribution plot(s).  >   how come values for bout.xvg came in the range of 0 to 40?  Your data occur at very different frequencies.  -Justin  --  ==================================================  Justin A. Lemkul, Ph.D. Assistant Professor Virginia Tech Department of Biochemistry  303 Engel Hall 340 West Campus Dr. Blacksburg, VA 24061  jalemkul at vt.edu | (540) 231-3129 http://www.thelemkullab.com  ==================================================  --  Gromacs Users mailing list  * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!  * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists  * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org. 


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