[gmx-users] 2D density maps

[Yasser Almeida Hernández]

Hello,

I am running simulations of a membrane protein embedded in a E. coli 
model membrane. I want to generate 2D density plots to visualize lipids 
clustering and interaction with the protein, and membrane thickness. 
Which tool would you recommend? I have seen the tools from Luca 
Monticelli web site, reported in 
https://www.sciencedirect.com/science/article/pii/S0009308413000236?via%3Dihub.

Thanks in advance

Yasser

-- 
Yasser Almeida Hernández
PhD student
Institute of Biochemistry and Molecular Biology
Department of Chemistry
University of Hamburg
Martin-Luther-King-Platz 6
20146 Hamburg
Germany
+49 40 42838 2845
yasser.almeida.hernandez at chemie.uni-hamburg.de
office: Grindelallee 117, room 250c