[gmx-users] Fatal error: Invalid T coupling input: 0 groups, 1 ref-t values and 1 tau-t values
Gonzalez Fernandez, Cristina
cristina.gonzalezfdez at unican.es
Thu Jul 12 17:24:31 CEST 2018
Dear Gromacs users,
I am trying to perform a NVT equilibration. However, I obtain this error:
Fatal error:
Invalid T coupling input: 0 groups, 1 ref-t values and 1 tau-t values
I don't understand the problem because I don't have defined any group, I am indicating the ref-t and tau-t for the whole system.
My .mdp file is:
define = -DPOSRES ; position restrain the lipid
; Run parameters
integrator = md ; leap-frog integrator
nsteps = 50000 ; 2 * 50000 = 100 ps
dt = 0.002 ; 2 fs
; Output control
nstxout = 500 ; save coordinates every 1.0 ps
nstvout = 500 ; save velocities every 1.0 ps
nstenergy = 500 ; save energies every 1.0 ps
nstlog = 500 ; update log file every 1.0 ps
; Bond parameters
continuation = no ; first dynamics run
constraint_algorithm = lincs ; holonomic constraints
constraints = all-bonds ; all bonds (even heavy atom-H bonds) constrained
lincs_iter = 1 ; accuracy of LINCS
lincs_order = 4 ; also related to accuracy
; Neighborsearching
cutoff-scheme = Verlet
ns_type = grid ; search neighboring grid cells
nstlist = 10 ; 20 fs, largely irrelevant with Verlet
rcoulomb = 1.2 ; short-range electrostatic cutoff (in nm)
rvdw = 1.2 ; short-range van der Waals cutoff (in nm)
; Electrostatics
coulombtype = PME ; Particle Mesh Ewald for long-range electrostatics
pme_order = 4 ; cubic interpolation
fourierspacing = 0.16 ; grid spacing for FFT
; Temperature coupling is on
tcoupl = nose-hoover ; nose-hoover thermostat
tau_t = 0.1 ; time constant, in ps
ref_t = 298 ; reference temperature, one for each group, in K
; Pressure coupling is off
pcoupl = no ; no pressure coupling in NVT
; Periodic boundary conditions
pbc = xyz ; 3-D PBC
; Dispersion correction
DispCorr = EnerPres ; account for cut-off vdW scheme
; Velocity generation
gen_vel = yes ; assign velocities from Maxwell distribution
gen_temp = 298 ; temperature for Maxwell distribution
gen_seed = -1 ; generate a random seed
Could anyone help me?
Thank you in advance,
C.
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