[gmx-users] unusual trajectory

[Atila Petrosian]

Dear Alex and gromacs users,

I used trjconv -pbc whole. But my problem was not solved.

You said "What I am trying to say is that per se nothing wrong seems

to be happening". As I uderstood, in analyses such as gmx rms and

gmx distanc and gmx traj (which I need them) this trajectory is not

appropriate and should be corrected and modified.

Which option of trjconv solve my pbc problem?


Best regards,

Atila