[gmx-users] rdf calculation for wormlike micelles

[Joe Jordan]

See here for info on the selection syntax
http://manual.gromacs.org/documentation/5.1/onlinehelp/selections.html

On Wed, Mar 14, 2018 at 10:01 AM, Esra Kaçar <esrakacar at iyte.edu.tr> wrote:

> Dear all,
>
> I am working on a wormlike micelle that has a curved structure. I want to
> calculate the radial distribution functions of constituent molecules with
> respect to the backbone (the line following the micelle length and
> represents the center of the curved cylindrical structure) of the wormlike
> micelle. Since the structure is curved, I couldn’t find out how to select
> the backbone as a reference point in g_rdf. I am using Gromacs v 5.1.  Any
> suggestions would be appreciated.
>
> Thanks,
>
> Esra
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-- 
Joe Jordan