[gmx-users] mdp options for Amber99sb-ildn

Saleheh Heidari sl.heidari at gmail.com
Fri Mar 16 16:28:29 CET 2018

Dear Gromacs Users

I am trying to run a molecular dynamics simulation of DNA by amber99sb-ildn
forcefield. The topology has been generated successfully, the solvent and
ions has been added.

I would like to know how to determine the mdp file options in minimization
and equilibration step for the Amber forcefield. Should I change these
options from the defaults of the tutorial according to my forcefield?


Saleheh Heydari

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