[gmx-users] mdp options for Amber99sb-ildn

[Saleheh Heidari]

Dear Gromacs Users

I am trying to run a molecular dynamics simulation of DNA by amber99sb-ildn
forcefield. The topology has been generated successfully, the solvent and
ions has been added.

I would like to know how to determine the mdp file options in minimization
and equilibration step for the Amber forcefield. Should I change these
options from the defaults of the tutorial according to my forcefield?

best,

Saleheh Heydari