[gmx-users] source code for velocity information

Paul bauer paul.bauer.q at gmail.com
Wed Mar 21 10:13:32 CET 2018


Hello,

in newer versions of Gromacs you can generate documentation from the 
comments in the code using Doxygen.
This is then build and included in a local copy of the html 
documentation when running `make  webpage`, or `make doxygen-all`
You can then navigate the code documentation there or at the official 
site for the current version 
(http://manual.gromacs.org/documentation/current/index.html).
I would still highly recommend using something more recent than 5.x, as 
those versions have also left maintenance now.
You could try either the 2016 or 2018 releases, both of them are 
officially supported right now.

/Paul

On 21/03/18 09:36, 刘杰 wrote:
> hellow Joe JordanSo glad to  receive your adcives, I have installed gromacs5.1.1, and useing  gromacs for three years , but I know little about  a newer version you can use the automatically generated function documentation as you said , could you give more details about this. any help will be appreciate.
>
>
> Liu Jie
>
>
>
> 在 2018-03-21 15:39:41,"Joe Jordan" <e.jjordan12 at gmail.com> 写道:
>> A few suggestions:if you use a newer version you can use the automatically generated
> function documentation to find what you want
>>> *use a newer version of gromacs; 4.x is no longer supported with bug fixes >*use find or grep to find what you want >*if you use a newer version you can use the automatically generated >function documentation to find what you want > >On Wed, Mar 21, 2018 at 2:44 AM, 刘杰 <liujie200802 at 163.com> wrote: > >> Dear all, Iam trying to add viscidity bond code to gromacsc 4.0.7. I >> found the harmonic bond code in bondfree.c ,but i could not conform which >> source document include the velocity information . Can somebody please >> advise me on how to overcome this issue?Thank you. Regards, jieliu >> -- >> Gromacs Users mailing list >> >> * Please search the archive at http://www.gromacs.org/ >> Support/Mailing_Lists/GMX-Users_List before posting! >> >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> * For (un)subscribe requests visit >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or >> send a mail to gmx-users-request at gromacs.org. >> > > > >-- >Joe Jordan >-- >Gromacs Users mailing list > >* Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! > >* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >* For (un)subscribe requests visit >https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.





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