[gmx-users] Restrain free energy

Tùng Hoàng hoangtung9597 at gmail.com
Wed Oct 3 16:27:08 CEST 2018


Dear Gromacs users,

I follow this tutorial,
http://www.alchemistry.org/wiki/Absolute_Binding_Free_Energy_-_Gromacs_2016#cite_ref-Mobley2006_7-0
 i don't know how to restrain it !!! 1 bond 2angle 3 diheral, and i see in
complex.top [intramolecular-interaction] and they using lamda bond!!
i want to calculate differ protein ligand , but i don't know how to set up
like this. or restrain and calculate denta G restrain.
I 'm stuck for 2 month... please help me.
thank you all,

Best regards,
Tung

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Hoàng Tùng / student
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University of Medicine and Pharmacy I Ho Chi Minh City
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