[gmx-users] pulling in opposite direction

Rakesh Mishra rockinbhu at gmail.com
Fri Oct 5 06:50:56 CEST 2018


Dear Justin thanks for ur reply.
Which means in this case,both group will act as a reference group for each
other.

Then now my question is, why without using two biasing potential, in case
of using one
biasing potential for two group, If I do not constrained reference group
then it automatically
move in the opposite direction w.r.t pulling group.


On Thu, Oct 4, 2018 at 6:48 PM Justin Lemkul <jalemkul at vt.edu> wrote:

>
>
> On 10/4/18 3:09 AM, Rakesh Mishra wrote:
> > Dear all.
> >
> > How it is possible to pull reference group as well as pull group using
> > gromacs protocol simultaneously in opposite direction using umbrella
> > protocol
> > of pulling. So far non of the Gromacs expertise  have given the answer of
> > this question. Hoping from response
> >
>
> If you want to pull two things in opposite directions, you need two
> biasing potentials.
>
> -Justin
>
> --
> ==================================================
>
> Justin A. Lemkul, Ph.D.
> Assistant Professor
> Virginia Tech Department of Biochemistry
>
> 303 Engel Hall
> 340 West Campus Dr.
> Blacksburg, VA 24061
>
> jalemkul at vt.edu | (540) 231-3129
> http://www.thelemkullab.com
>
> ==================================================
>
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>


-- 

*With Best-Rakesh Kumar Mishra*
*  (RA)CSD  SINP Kolkata, India*

*E-mail - rakesh.mishra at saha.ac.in <rakesh.mishra at saha.ac.in> *

*Phone n. +91 9473662491, +918777496532*


More information about the gromacs.org_gmx-users mailing list