[gmx-users] phosphorylated residues simulation usinh gromacs

[Benson Muite]

Hi,

Following may be helpful:

http://manual.gromacs.org/documentation/2019-beta1/user-guide/force-fields.html#gmx-amber-ff

Regards,

Benson

On 10/23/18 11:52 AM, farial tavakoli wrote:
> Dear GMX users
> I need to simulate the complex composed of a protein and a peptide which has phosphotyrosine using AMBER99SB force field in GROMACS. cited to the " https://personalpages.manchester.ac.uk/staff/Richard.Bryce/amber/index.html " to download .OFF and .FRCMOD files of phosphotyrosine. but now I dont know how to use these files in GROMACS. There is no AMBER tutorial in gromacs . I searched google to find that but couldnt find stage by stage guides. Is there anyone can help me how I should use these files in GROMACS?I am sorry because of my english.
> Thanks in advanceFarial