[gmx-users] parameters for plotting 2D density map with gmx densmap and xpm2ps
Stephane.ABEL at cea.fr
Tue Oct 23 16:49:28 CEST 2018
I would like to obtain a 2D density map plot as for instance Fig. 4 in the following paper (DOI 10.1007/s00232-014-9690-8) for a membrane protein inserted in a surfactant micelle with gmx densmap and xpm2ps . I have few questions
- Have any of you ever done this type of plot? If yes, how?
- What parameters for densmap and/or xpm2ps did you use?
- How did you combine the protein and surfactant xpm files into a single one to obtain the same plot as Fig. 4
Thanks in advance for your help
More information about the gromacs.org_gmx-users