[gmx-users] i have a question about multiple chain simulation at the same box

milad bagheri milad9bagheri at gmail.com
Wed Sep 5 15:25:34 CEST 2018

I'm going to examine the interaction between the two proteins using
molecular dynamics simulation by gromacs, so I downloaded pdb code 5op1
from the rcsb , which has two protein(Complex). I want to create a gap
between two protein, and then with the same coordinate Put these two
proteins in a box and run MD 100 nanoseconds, for validation this trick
compare rmsd x-ray pose and Md pose.
please help me ...

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