[gmx-users] secondary structure analysis

[Soham Sarkar]

You can use do_dssp utility to generate the secondary structure

On Mon, 24 Sep 2018, 5:34 pm SHAHEE ISLAM, <islamshahee at gmail.com> wrote:

> hi,
> i am doing martini based coarsed coarse grained simulation in
> gromacs.after getting the coarse grained structure ,i can convert cg
> pdb it to the gro file.using vmd, seondary structure can be
> analysed.can any one suggest what may be the best way to calculate the
> secondary structure change of protein.
> thanking you
> shahee
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