[gmx-users] Lincs warning_set GMX_MAXCONSTRWARN to -1

[Mark Abraham]

Hi,

That apparent bonding pattern is an artefact of your visualization tool -
see
http://manual.gromacs.org/documentation/current/user-guide/faq.html#analysis-and-visualization.
The question for you is why they got so close. Did they start that way? Did
something push them there?

Mark

On Thu, 4 Apr 2019 at 14:14 Anjali Patel <anjalipatel60316 at gmail.com> wrote:

> Thank you @Mark Abraham & Naveen BK.
>
> @ Mark Abraham
> I have visualize the system and yes there are two H2O molecules which are
> bonded to each other. Oxygen is bonded to other molecule's Hydrogen atom.
> How i can solve this. should i do optimization again but how only for water
> molecules?
>
>
> With regards
> Anjali Patel
> Research Scholar
> Department of Physics
> The M S University of Baroda, Vadodara-390002
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