[gmx-users] Polymerization in gromacs

[이영규]

Dear users,

I am currently having trouble with polymerization, joining the nearby atoms
if they are within the polymerization distance. My system consists of 2
monomers. The procedure what I did was that first put monomers in the box
and equilibrate it by extending box size. After I get the final box size
and equilibrate the system, I have to connect monomers. This point is what
I am stuck and here's my question.

Q. Is there any command or procedure that I can do with gromacs about the
polymerization? If not, does anyone let me know how to do or the software
doing this polymerization?

Thanks in advance
-- 

Yeongkyu Lee

M.S student

Department of Physics

501, Jinjudaero, Jinju, Gyeongnam
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52828, Korea

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