[gmx-users] 2019.2 build warnings

Alex nedomacho at gmail.com
Mon Apr 29 18:47:12 CEST 2019


Hi Szilárd,

Since I don't know which directory inside /complex corresponds to which 
tests (at least one of the tests that failed was #42), here's a tarball 
of the entire /complex directory per location you specified below:

https://www.dropbox.com/s/44uluopkdan2417/regression_complex_2019.2.tar.gz?dl=0

If you can help us figure this out, it will be great!

Thanks,

Alex

On 4/29/2019 4:25 AM, Szilárd Páll wrote:
> Hi,
>
> I assume you used -DREGRESSIONTEST_DOWNLOAD=ON case in which the tests are
> downloaded and unpacked under
> BUILD_TREE/tests/regressiontests-release-2019-[SUFFIX]/
>
> In that directory you find the usual regressiontests tree, from there under
> complex/ you'll find the tests in question.
>
> Cheers,
> --
> Szilárd
>
>
> On Fri, Apr 26, 2019 at 7:00 PM Alex <nedomacho at gmail.com> wrote:
>
>> Hi Szilárd,
>>
>> I am at a conference right now, but will do my best to upload the
>> requested data first thing on Monday. In the meantime, could you please
>> tell me where the stuff of interest would be located within the local
>> gromacs build directory? I mean, I could make the entire directory a
>> tarball, but not sure it's all that necessary. I don't remember which tests
>> failed, unfortunately...
>>
>> Thank you!
>>
>> Alex
>>
>> On 4/25/2019 2:54 AM, Szilárd Páll wrote:
>>> Hi Alex,
>>>
>>> On Wed, Apr 24, 2019 at 9:59 PM Alex <nedomacho at gmail.com> wrote:
>>>
>>>> Hi Szilárd,
>>>>
>>>> We are using neither Ubuntu 18.04, nor glibc 2.27, but the problem is
>>>> most certainly there.
>>> OK.
>>>
>>> Can you please post the content of the directories of tests that failed?
>> It
>>> would be useful to know the exact software configuration (reported in the
>>> log) and the details of the errors (reported in the mdrun.out).
>>>
>>> Thanks,
>>> --
>>> Szilárd
>>>
>>>
>>>
>>>> Until the issue is solved one way or another, we
>>>> will be staying with 2018.1, i guess.
>>>>
>>>> $ lsb_release -a
>>>>
>>>> No LSB modules are available.
>>>>
>>>> Distributor ID: Ubuntu
>>>>
>>>> Description:    Ubuntu 16.04.6 LTS
>>>>
>>>> Release:        16.04
>>>>
>>>> Codename:       xenial
>>>>
>>>> Ubuntu GLIBC 2.23-0ubuntu11
>>>>
>>>>
>>>> On 4/24/2019 4:57 AM, Szilárd Páll wrote:
>>>>> What OS are you using? There are some known issues with the Ubuntu
>> 18.04
>>>> +
>>>>> glibc 2.27 which could explain the errors.
>>>>> --
>>>>> Szilárd
>>>>>
>>>>>
>>>>>
>>>>>
>>>> --
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