[gmx-users] Change forcefield directory

Dawid das addiw7 at googlemail.com
Thu Aug 8 20:33:14 CEST 2019


Hi,

You need to set the GMXLIB to directory with a modified forcefield. Just
copy all other files apart from aminoacids.rtp to a new directory with a
forcefield.
Also, if you want to be sure that you use a correct force field, you can
modify first line of forcefield.doc file into something like "My force
field".
That's what you'll see when you run your pdb2gmx and will be asked to
choose a force field.

Best regards,
Dawid Grabarek

czw., 8 sie 2019 o 20:27 Neena Susan Eappen <
neena.susaneappen at mail.utoronto.ca> napisał(a):

> Hello gromacs users,
>
> I had to add a new residue into forcefield, that required copying
> aminoacid.rtp file into my home folder (as gromacs is installed on a shared
> network).
> During pdb2gmx, how can I redirect the following to my home folder? Where
> can I edit this change in forcefield directory?
>
> Select the Force Field:
> From '/programs/x86_64-linux/gromacs/2018.4/share/gromacs/top':
>
> Many thanks,
> Neena
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>


More information about the gromacs.org_gmx-users mailing list