[gmx-users] Residue XXX not found in residue topology database

Justin Lemkul jalemkul at vt.edu
Tue Aug 27 03:23:59 CEST 2019



On 8/26/19 8:27 PM, Neena Susan Eappen wrote:
> Hello gromacs users,
>
> I saw the following error for a modified residue I added though I edited all necessary files including PDB. I also read the gromacs documentation on this error.
>
> Residue XXX not found in residue topology database.
>
> Any hints on what might be happening?

Not without a precise listing of exactly what you did. 99% of the cases 
that raise this error are specifically addressed by 
http://manual.gromacs.org/current/user-guide/run-time-errors.html#residue-xxx-not-found-in-residue-topology-database 
in concert with http://manual.gromacs.org/current/how-to/topology.html

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Assistant Professor
Office: 301 Fralin Hall
Lab: 303 Engel Hall

Virginia Tech Department of Biochemistry
340 West Campus Dr.
Blacksburg, VA 24061

jalemkul at vt.edu | (540) 231-3129
http://www.thelemkullab.com

==================================================



More information about the gromacs.org_gmx-users mailing list