[gmx-users] Mutant_md_1ns.log, WT_md_1ns.log + 1 more item

Lei Qian (via Google Drive) drive-shares-noreply at google.com
Wed Aug 28 16:52:16 CEST 2019


I've shared some items with you:

Mutant_md_1ns.log
https://drive.google.com/file/d/1qDoghj6Orc8yJTnLgvuhOERzMUfaH2Dd/view?usp=sharing&ts=5d66951d

WT_md_1ns.log
https://drive.google.com/file/d/1gSTOnEpIj6UcqnfuNS-TvOosQKJCWJsa/view?usp=sharing&ts=5d66951d

WT_md_10ns.log
https://drive.google.com/file/d/1UeLAcT4UZ6IpUKWJL7ahNRKmYmFt0Eeg/view?usp=sharing&ts=5d66951d

They're not attachments -- they're stored online. To open these items, just  
click the links above.

Dear Users,

Sorry for this inconvenience.
Could I ask a question about Gromacs running time for my Wide Type and  
mutant protein (only 1 residue mutant)? Thanks!

I attach the three log files here.
(1) WT protein running for 1ns production step.(wall time: 1hour 40min).
(2) WT protein running for 10ns production step (wall time: 6days 09h17).
(3) Mutant protein running for 1ns production step. (wall time: 17hours  
30min).

 From the log files, I can find each of them ran on one node with 24 cores.
It seems the wall times for (1) and (2) do not have linearly proportional  
relationship. And (3) running took much longer time than I expected, since  
mutant protein is only one residue mutant.
Thanks!


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