[gmx-users] gmx hbond

[rose rahmani]

Thank you. But it just adjusts the cut-off between atoms not the number of
hydrogen bonds in a given distance above the surface (or in the box). would
you please help me?

Best

On Sun, Jan 6, 2019 at 9:12 PM paul buscemi <pbuscemi at q.com> wrote:

> Use VMD/extensions/hydrogen bonds
>
> > On Jan 6, 2019, at 11:01 AM, rose rahmani <rose.rhmn93 at gmail.com> wrote:
> >
> > hi,
> >
> > I want to know the number of hydrogen bonds of amino acid with water in
> > different distances above surface. for example in first 0.2nm, in second
> > 0.2 nm(0.2-0.4 nm) above surface. how can i do it by gmx hbond? I
> couldn't
> > find any proper option for that.
> >
> > best
> > --
> > Gromacs Users mailing list
> >
> > * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
> >
> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >
> > * For (un)subscribe requests visit
> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>