[gmx-users] inflategro2

[Netaly Khazanov]

Hi All,
My membrane contains a mixture of DPPC and DOPC lipids and aligned protein.
I am trying to insert protein into the membrane using inflategro2 scripts.
During the running the script is  writing:
Deep recursion on subroutine "main::dynInflating" at
/home/gnss/netaly/FL_CFTR_Cduction/onelayer/Healthy_membrane_DPPC_DOPC_new/inflategro2_rc1/inflategro2_rc1/tegro2_org
line 736, <STDIN> line 3.
Used an inflating factor of 17.7 to solve protein-lipid overlaps
And the output inflated.gro file showed that dynamic lipids weren't scaled
back and retained detached from the membrane.
inflategro2_org -f protein_ATP_membrane_box1.gro -n index.ndx -p topol.top
-m deflate_org.mdp -v
Any help will be appreciated!
Thanks,
Netaly Khazanov


-- 
Netaly