[gmx-users] High potential energy
Ali Ahmed
aa5635737 at gmail.com
Wed Jan 30 00:55:14 CET 2019
Hello GMX users
I'm simulating a complex system. I started with energy minimization step
which went fine then followed by a short NPT for equilibration then
followed by energy minimization for more minimization and its output as
below
Steepest Descents converged to Fmax < 10 in 3783 steps
Potential Energy = -3.0612996e+04
Maximum force = 9.8396473e+00 on atom 3209
Norm of force = 1.0086957e+00
However, when I started NVT production, I see the potential of the system
goes up to a positive value
Energies (kJ/mol)
Angle Proper Dih. Ryckaert-Bell. Improper Dih. LJ-14
7.61233e+04 8.43296e+02 2.83000e+04 2.89344e+02 6.94750e+04
Coulomb-14 LJ (SR) Disper. corr. Coulomb (SR) Coul. recip.
-1.58903e+04 -8.17942e+04 -1.07861e+04 5.24188e+03 5.14340e+03
Potential Kinetic En. Total Energy Conserved En. Temperature
7.69455e+04 1.16251e+05 1.93197e+05 -7.02956e+04 3.00338e+02
Pres. DC (bar) Pressure (bar) Constr. rmsd
-3.58345e+02 2.99966e+02 6.24109e-05
I don't know what happened and why the potential goes up. Should I worry
about this?
Thanks
ِAli
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