[gmx-users] VMD movie making-remove water molecules from .trr after a simulation

mary ko maryko2019 at yahoo.com
Mon Mar 11 23:01:44 CET 2019

Dear all
How can I make a movie from a protein-ligand simulation in VMD? I opened complex.pdb and md-fit.trr and  the movie is shown but due to the large number of water molecules it freezes after some frames. How can I remove solvent molecules from the md-fit.trr? Any other suggestions how to make the movie without freezing?
Thank you.

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