[gmx-users] nonstandard hydrogen names

MD refmac5 at gmail.com
Fri Mar 22 15:30:12 CET 2019

Hi Gromacs folks,
I have a quick question on the nonstandard H names. After simulation the
Hydrogen names are all having the names adopted from the forcefield I used
(charmm), e.g. HG1 instead of H, which is giving me problem displaying the
correct charging surface because the chimera I use doesn't recognize HG1 as
hydrogen. I wonder how you fix this type of issue, without further editing
the pdb?

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