[gmx-users] Help regarding clustering of conformations

[Sidhanta Swayam Prakash Das]

hello,
i have the output files of 100ns production simulations. I have treated for
PBC. I want to find clusters of the trajectories. This can be done using
gmx cluster.
But i want to do energy minimization of each snapshot in the trajectory and
then make clusters.
Is there any command or option or solution for this?


Thank you
-- 
Sidhanta Swayam Prakash Das