[gmx-users] gmx hbond query

Najamuddin Memon najamuddinmemon63 at gmail.com
Thu May 9 09:39:33 CEST 2019

Make index of water mediated hydrogens and DNA bases so that DNA bases are
in separate group and water mediated hydrogens in separate group in drop
down menu

On Thu, May 9, 2019, 11:54 AM <spss4 at iacs.res.in> wrote:

> Dear all
> I want to determine the water mediated hydrogen between DNA bases and
> small molecule. What extra flag should I use in gmx hbond command? Is
> there any other option to capture the water mediated Hbonds? Please
> suggest something.
> Sunipa Sarkar
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