[gmx-users] Topology regarding

[RAHUL SURESH]

Hi gromacs users.

To simulate a non-protein, (definitely not a small molecule), a molecule
with 200 atoms, composing of C, N and H only, any suggestions to start with
the groundwork?
Precisely, if I am starting with updating the ff, ie to update the rtp
entry for the molecule in atomtypes.rtp, is it compulsory to name the
repeating atoms with different names?
Can i name all the carbon to be C and Nitrogen to be N and Hydrogen to be H?

Should I also update bonded and nonbonded files and hdb files?

I kindly request your valuable suggestions. Please.

-- 
*Regards,*
*Rahul *