[gmx-users] index file for special residues

mmousivand93 mmousivand93 at ut.ac.ir
Sun May 26 10:37:40 CEST 2019

Dear all, I am going to generate index file for special residues in my
aptamer, I use the command " make_ndx -f *.gro -o index.ndx and then
select group as DNA and Special residue as fallow ">1|r 4 5 7 36    .
The index file for whole aptamer and special residue is similar, I would
be appreciate any suggestion. 



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