[gmx-users] Unusual bond between residues which are capped

[Dilip.H.N]

Hi all,
I have a peptide which is capped on the N-terminal and C-terminal with
acetyl and N-methyl groups.
But when i view this in vmd, i get the following error as:

Warning) Unusual bond between residues:  1 (none) and 2 (protein)
Warning) Unusual bond between residues:  8 (protein) and 9 (none)
Warning) Unusual bond between residues:  1 (none) and 2 (protein)
Warning) Unusual bond between residues:  8 (protein) and 9 (none)
Warning) Unusual bond between residues:  1 (none) and 2 (protein)
Warning) Unusual bond between residues:  8 (protein) and 9 (none)

Here 1 (none) is the acetyl group and 9 (none) is the N-methyl group which
are capped to the protein C and N terminals.

How can i solve this issue..??

Any suggestions?
Thank you.
---
With Best Regards,

Dilip.H.N
Ph.D. Student.



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27/05/19,
10:24:16