[gmx-users] index file for special residues

[mmousivand93]

Dear Dr. Dallas Warren 

Thanks a lot 

Maryam 

On 2019-05-27 02:09, Dallas Warren wrote:

> "|" = or
> 
> What you want is "&" = and
> 
> aptamer | r special = aptamer
> aptamer & r special = special
> 
> Catch ya,
> 
> Dr. Dallas Warren
> Drug Delivery, Disposition and Dynamics
> Monash Institute of Pharmaceutical Sciences, Monash University
> 381 Royal Parade, Parkville VIC 3052
> dallas.warren at monash.edu
> ---------------------------------
> When the only tool you own is a hammer, every problem begins to resemble a nail.
> 
> On Sun, 26 May 2019 at 18:37, mmousivand93 <mmousivand93 at ut.ac.ir> wrote: 
> 
>> Dear all, I am going to generate index file for special residues in my
>> aptamer, I use the command " make_ndx -f *.gro -o index.ndx and then
>> select group as DNA and Special residue as fallow ">1|r 4 5 7 36    .
>> The index file for whole aptamer and special residue is similar, I would
>> be appreciate any suggestion.
>> 
>> Best
>> 
>> Maryam
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