[gmx-users] calculation of cross sectional area of protein on lipid

[SHAHEE ISLAM]

thank you so much for your guidance.

On Wed, Nov 6, 2019 at 6:41 PM Justin Lemkul <jalemkul at vt.edu> wrote:

>
>
> On 11/6/19 8:03 AM, SHAHEE ISLAM wrote:
> > hi,
> > i want to calculate the cross sectional area of protein on the lipid
> layer.
> > Can anyone please guide me how can i do that. By using gmx sasa i can
> > calculate the surface area of protein. What should i choose so that i can
> > calculate cross section area of protein on lipid bilayer.
>
> There is no GROMACS program that will do this. However, you can get this
> quantity with GridMat-MD: https://github.com/jalemkul/gridmat-md
>
> -Justin
>
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> Justin A. Lemkul, Ph.D.
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