[gmx-users] c2075 is not detected by gmx
paul buscemi
pbuscemi at q.com
Wed Nov 27 14:19:59 CET 2019
take a look at
https://docs.nvidia.com/cuda/cuda-memcheck/index.html <https://docs.nvidia.com/cuda/cuda-memcheck/index.html>
make sure the GPU is functioning correctly with CUDA
> On Nov 24, 2019, at 4:32 PM, paul buscemi <pbuscemi at q.com> wrote:
>
> Did you install the CUDA toolbox and drivers ?
> What is the output from "nvidia-smi" ?
>
>> On 24,Nov 2019, at 1:31 PM, Mahmood Naderan <nt_mahmood at yahoo.com> wrote:
>>
>> Hi
>> I have build 2018.3 in order to test that with c2075 GPU.
>> I used this command to build it
>> $ cmake .. -DGMX_GPU=on -DCMAKE_INSTALL_PREFIX=../single -DGMX_BUILD_OWN_FFTW=ON
>>
>> $ make
>> $ make install
>>
>> I have to say that the device is detected according to deviceQuery. However, when I run
>>
>>
>> $ gmx mdrun -nb gpu -v -deffnm nvt_5k
>>
>>
>> I get this error
>>
>> Fatal error:
>> Cannot run short-ranged nonbonded interactions on a GPU because there is none
>> detected.
>>
>>
>> That is weird, because I also see this message
>>
>> WARNING: An error occurred while sanity checking device #0; cudaErrorMemoryAllocation: out of memory
>>
>>
>>
>> The device has 6GB of memory and I am sure that my input file doesn't need that because I have run it on a GPU with 4GB of memory/
>>
>> Any idea?
>>
>> Regards,
>> Mahmood
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