[gmx-users] Pro-Lig Error

[Iman Katouzian]

Hello,

I have simulated a protein-ligand file and produced the ligand file by
antechamber software using the Amber03 force field. All the stages in
Gromacs were performed correctly without any error however when I ran this
code :

gmx grompp -f MDP/ions.mdp -c solv.gro -p topol.top -o ions.tpr
I encounter this error:

Fatal error:
number of coordinates in coordinate file (solv.gro, 40906)
             does not match topology (topol.top, 40950)

I just performed my simulation many times but I could not pass this error.

Thanks



-- 

*Iman Katouzian*

*Ph.D.** candidate of Food Process Engineering*

*Faculty of Food Science and Technology*

*University of Agricultural Sciences and Natural Resources, Gorgan, Iran*