[gmx-users] "Re: Shape of the aggregate (Dallas Warren)"

[Aishwarya Dhar]

Yes, of course I know that GROMACS measures things in nanometers and VMD
uses Angstroms.

Basically it is in coarse grain representation.  In general since the
aggregate consist of all the beads. I have taken the entire pdb of the
aggregate as in input which should take the end to end distance.

Do you think that it the problem of Coarse Grain bead?
Or is there anything I am missing?



Aishwarya