[gmx-users] Error running gromacs tutorial

antonia vyrkou avyrkou at gmail.com
Thu Oct 10 11:25:09 CEST 2019


Does the minimization end normally or it crashes?

On Thu, Oct 10, 2019 at 9:27 AM Suprim Tha <shrestha.suprim123 at gmail.com>
wrote:

> I was trying Gromacs based upon the tutorial on
> http://www.mdtutorials.com/gmx/lysozyme/05_EM.html
> However, when I run the command gmx mdrun -v -deffnm em, only em.log,
> em.edr and em.tpr are formed but not em. trr and em.gro Without the energy
> minimized .gro file, I cannot continue further. Please help me with this. I
> have tried two different proteins and still I am stuck with the same step.
> Thanks in advance.
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