[gmx-users] Fwd:

saranya saranyahoney17 at gmail.com
Sun Oct 27 11:25:29 CET 2019


Hi users,
         I am performing a simulation for a protein-metal cluster complex
system. I am trying to generate itp file for the metal cluster (Au) having
144 atoms. I have taken itp file of the metal cluster (Au) with ligand from
an article(doi: 10.1016/j.colsurfa.2016.05.038) and extracted the
parameters of metal clusters alone and I used it for my system preparation.
During the energy minimization, Gromacs has shown errors like

     An input file contains a line longer than 4095 characters, while the
buffer passed to fgets2 has size 4095. The line starts with: '
       '...............................................................
Kindly need your valuable suggestions in this regard.

With regards,

*Saranya Vasudevan,*

*Research Scholar,*

*Molecular Quantum Mechanics Laboratory,*

*Department of Physics,*

*Bharathiar University,*

*Coimbatore-46*
-- 

*Saranya Vasudevan,*

*Research Scholar,*

*Molecular Quantum Mechanics Laboratory,*

*Department of Physics,*

*Bharathiar University,*

*Coimbatore-46*


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