[gmx-users] Measuring bond distances, angles and dihedrals

[Yu Du]

Hi Robert,

Yes, I always use VMD Tcl scripts to analyse trajectories after MD simulation. The bond distances and angles between atom cluster centroids can definitely be extracted by VMD.  But I don't know how to extract them using GROMACS. If your project is not so urgent, VMD is your choice. It is fairly flexible and can almost satisfy all your requirements.

Cheers,
Yu