[gmx-users] How to add two different "defaults" parameters in topology file
mbhendle
mbhendle at iitk.ac.in
Wed Feb 5 18:55:02 CET 2020
Hello all,
I am trying to simulate polymers in tip4p-ice and for that I need to set
two different "defaults" parameters for polymer chain and TIP4P-ICE in
topology file. The "moleculetype" for Polymer chain and water is also
different:
[ defaults]
; nbfunc comb-rule gen-pairs fudgeLJ fudgeQQ (for polymer)
1 3 yes 0.5 0.5
[ defaults]
; nbfunc comb-rule gen-pairs fudgeLJ fudgeQQ (for TIP4P-ICE)
1 2 no 1 1
[moleculetype]
;Name nrexcl
Other 3 ;(Polymer)
SOL 1 ;(TIP4P-ICE)
For this purpose, I have created two different ".itp" files for polymer
chain and TIP4P-ICE. But while running "gmx grompp" gromacs is showing
"Invalid order for directive moleculetype". I also tried putting two
defaults parameters into ".top" file itself. But it also showed error.
Please suggest how to do it.
Thanks & Regards,
Mangesh Bhendale
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