[gmx-users] generating Doxygen documentation

[Michele Pellegrino]

Mark,

no such directory is produced after make (evein if the output is 'Built target doxygen-all').
The only Doxyfile I can utilize to generate html/latex documentation is 'Doxyfile-compact', while all others are still 'Doxyfile-*.cmakein'.

It seems I need to run cmake somewhere, somehow, but it's not really clear to me in which directory (and with which options(s)).

Cheers,
Michele
________________________________________
From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se <gromacs.org_gmx-users-bounces at maillist.sys.kth.se> on behalf of Mark Abraham <mark.j.abraham at gmail.com>
Sent: 12 February 2020 17:34
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] generating Doxygen documentation

Hi,

When they succeed, the doxygen targets produce files like

$builddir/docs/html/doxygen/html-*/index.xhtml

which you can open in your browser. The doxygen for the released versions
is on the web however, so it's much easier to just use or refer to that.

Mark

On Wed, 12 Feb 2020 at 16:30, Michele Pellegrino <micpel at kth.se> wrote:

> Hi,
>
>
> I am trying to generate the Doxygen documentation for GROMACS from the
> files in /docs/doxygen.
>
> I following 2020 manual, I run 'make doxygen-all' in the build directory,
> succesfully; I don't know what to do next: I tried to run cmake in the
> doxygen directory to generate the Doxyfiles, but I get the following errors:
>
> """
>
> CMake Error at CMakeLists.txt:36 (include):
>   include could not find load file:
>
>     gmxCustomCommandUtilities
>
>
> CMake Error at CMakeLists.txt:37 (include):
>   include could not find load file:
>
>     gmxOptionUtilities
>
>
> CMake Error at CMakeLists.txt:53 (gmx_dependent_option):
>   Unknown CMake command "gmx_dependent_option".
>
> """
>
> What should I do?
>
>
> Thanks for your attention,
>
> Michele
>
>
> p.s. I am referring to the github master branch current version
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