[gmx-users] Cannot flush logfile - maybe you are out of disk space?

[Alessandra Villa]

Hi,

On Mon, Feb 17, 2020 at 7:48 AM Dilip.H.N <cy16f01.dilip at nitk.edu.in> wrote:

> Dear all,
> I have extended a simulation (extension for 50 ns) and after some time i
> get the following error "Cannot flush logfile - maybe you are out of disk
> space?" and now the simulation has stopped running. The log file of the
> simulation is stopped at say 83ns-
>  Step           Time
> 41566000    83132.00000
>
> Now i have made the disk-free and still, the simulation is still struck. So
> now may i know how can i proceed..??
>
>
You can use the checkpoint file to re-start your simulation.
(see
http://manual.gromacs.org/documentation/current/onlinehelp/gmx-mdrun.html?highlight=gmx%20mdrun
)

If the old process is still active, better kill it.

Best regards
Alessandra



> Any suggestions are highly appreciated.
>
> Thank you.
> ---
> With Best Regards,
>
>
> *Dilip.H.N*
> Ph.D Student.
>
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> 17/02/20,
> 12:14:16
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