[gmx-users] Selective RMSD calculation

Peter Mawanga peter.mawanga.lagos at gmail.com
Wed Feb 19 15:10:24 CET 2020


Hello everyone

After fitting the protein-ligand system to the starting conformation, I
would like to extract the RMSD information for the ligand only but cannot
find such an option for a selective output.

Please let me know if this can be achieved with the gmx tool, I couldn't
find such an option with both the "rms" and "rmsd" commands.

-- 
Thanks
Peter


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