[gmx-developers] more user variables
David
spoel at xray.bmc.uu.se
Thu Jun 17 16:58:44 CEST 2004
On Thu, 2004-06-17 at 16:49, Pim Schravendijk wrote:
> Dear List,
>
> Because of some tweaks I made to gromacs for my own purpose and which
> require more than 4 real variables, I want to add my own list of user
> variables to the grompp.mdp file. It will also allow me to give them nice
> names when I'm busy changing it anyway :)
>
> My is was as follows:
>
> - Add the types to : include/types/inputrec.h
>
> - In src/gmxlib/tpxio.c parse these variables in do_inputrec() (I guess
> this function just makes sure the variables are in the right format?)
>
> - In src/gmxlib/txtdump.c add some lines to pr_inputrec() to let gmxdump
> be able to output this data, is my wild guess
>
> - In src/kernel/readir.c I have to add my parameters as RTYPE in get_ir()
>
> - In src/kernel/tpbcmp.c I could add some lines to cmp_inputrec()
>
> I guess doing this should do the trick, or are there any traps I should be
> aware of?
It looks OK. You may want to check the code that sends around the data
for a parallel simulations (src/gmxlib/mvdata.c) but for scalars it
should be fine.
>
> Greetings, Pim
>
> --
> Pim Schravendijk - PhD Student
> Max Planck Institute for Polymer Research
> http://www.mpip-mainz.mpg.de/~schraven/
>
> _______________________________________________
> gmx-developers mailing list
> gmx-developers at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-developers
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-developers-request at gromacs.org.
--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
More information about the gromacs.org_gmx-developers
mailing list