[gmx-developers] Cannot allocate memory-genbox-FreeBSD

[David]

On Mon, 2004-06-28 at 18:13, marcos lourenzoni wrote:
> I have a problem when I am running genbox. My computer is a dual
> Xeon processor with 2GB of memory on FreeBSD 4.8 -stable. I think the
> problem is the FreeBSD. The test in the same computer with linux red
> hat was OK. Can you help me?
>     Containing 181 atoms in 13 residues
>     Initialising van der waals distances...
>     Reading solvent configuration
>    
> "216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR.
> 1984"
>     solvent configuration contains 648 atoms in 216 residues
>     Initialising van der waals distances...
>     Will generate new solvent configuration of 33x33x33 boxes
>     Fatal error: realloc for x_solvt (279446112 
check the following command
limit
then
limit memoryuse unlimited

> bytes, file genbox.c,
> line 402, x_so
>     lvt=0x0x 81fe000): Cannot allocate memory
>     #Entries in atommass.dat: 82 vdwradii.dat: 26 dgsolv.dat: 7
>     Marcos R. Lourenzoni
>     Universidade de Sao Paulo 
>     Departamento de Quimica
-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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