[gmx-developers] Coming on to help in GROMACS development
mrshirts at gmail.com
Tue Mar 15 15:40:37 CET 2005
Before I head into the response, one thing I wanted to check is what
the release schedule is for the next versions of GROMACS, so I will
know how to time my contributions. It's been hard to get any
information out on this subject :)
Back to the response:
> This depends a lot on the system I guess.
> For many system you do want to turn of the intramolecular non-bonded
> terms as the ensemble of the molecule would become very different
> in the vapor state, whereas a molecule without non-bonded interactions
> might have an ensemble closer to the solvated state.
Right, so this should be a configurable option.
> I guess that in put_in_list you would just have to check if both atoms
> are perturbed instead of only one in the pair.
> I have also made some changes put_in_list, especially for free-energy
Yep, that's pretty much what needs to be done.
> I accidentally put a question mark at the last line.
> I meant that I have implemented this and that it is in CVS.
Very good, I'll look over it.
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