[gmx-developers] gmx 3.3_rc1 - block_tx.c error
David Bostick
dbostick at scripps.edu
Fri Sep 9 03:48:35 CEST 2005
Hello again,
I'm sorry for posting again ... this is probably all due to my lack of
familiarity with CVS commands in general, but I tried the following:
cvs co -r release-3-3-patches gmx
I compiled and tried to run my test system, but still got the block_tx.c
error. So I tried the head branch, at least I think so, using the
following:
cvs co -r HEAD gmx
I did not try to run anything, but the header for a given program does
not say 3.3_beta20050831. Rather, it still says :-) VERSION 3.3_rc1 (-:.
I also tried just a regular cvs co gmx with the same result. By the way, I
don't think it matters, but I'm following the instructions on the gmx
website as closely as possible, so I give the commands like:
cvs -z3 -d :pserver:anoncvs at cvs.gromacs.org:/home/gmx/cvs login
cvs -z3 -d :pserver:anoncvs at cvs.gromacs.org:/home/gmx/cvs co gmx
Should I try something like
cvs co -r 3.3_beta20050831 gmx
?
thanks,
David
On Thu, 8 Sep 2005, Erik Lindahl wrote:
> Hi,
>
> That looks like a much older version; the head branch is currently
> 3.3_beta_20050831, and release-3-3-patches is version 3.3_rc1!
>
> Cheers,
>
> Erik
>
> On Sep 8, 2005, at 6:59 AM, David Bostick wrote:
>
> >
> > Hi Erik,
> >
> > I checked out the current CVS version and tested again. This time, I
> > tested a parallel run on 2 processors, which finished successfully.
> > However, when I tried on 4 processors, I get the same block_tx.c
> > error as
> > before, except that now the version cited for mdrun is 3.2.9_beta.:
> >
> > Reading file test.tpr, VERSION 3.3_rc1 (single precision)
> > -------------------------------------------------------
> > Program mdrun_mpi, VERSION 3.2.90_beta_20040828
> > Source code file: block_tx.c, line: 74
> >
> > Fatal error:
> > 0: size=816, len=840, rx_count=0
> >
> > -------------------------------------------------------
> >
> > The tpr file is from a version 3.3 grompp. Is it posssible
> > that something in the top branch CVS version is wrong? Previously,
> > the
> > mdrun version cited in the error was 3.3_rc1 as follows:
> >
> > Reading file test.tpr, VERSION 3.3_rc1 (single precision)
> > -------------------------------------------------------
> > Program mdrun_mpi, VERSION 3.3_rc1
> > Source code file: block_tx.c, line: 74
> >
> > Fatal error:
> > 0: size=0, len=4, rx_count=0
> >
> > -------------------------------------------------------
> >
> > David
> >
> >
> > On Wed, 7 Sep 2005, Erik Lindahl wrote:
> >
> >
> >> Hi Dave/Carsten,
> >>
> >> The fix should be in CVS (both release-3-3-patches and head
> >> branch) now.
> >>
> >> Cheers,
> >>
> >> Erik
> >>
> >> On Sep 7, 2005, at 6:54 AM, Carsten Kutzner wrote:
> >>
> >>
> >>> Hello David,
> >>>
> >>> this bug has been fixed yesterday by Erik.
> >>>
> >>> Carsten
> >>>
> >>>
> >>> On Tue, 6 Sep 2005, David Bostick wrote:
> >>>
> >>>
> >>>
> >>>>
> >>>> I also get the block_tx.c error on a 32 bit Xeon cluster.
> >>>>
> >>>> David
> >>>>
> >>>>
> >>>> On Tue, 6 Sep 2005, David Bostick wrote:
> >>>>
> >>>>
> >>>>
> >>>>>
> >>>>> Hello,
> >>>>>
> >>>>> I wasn't sure if I should go directly to the bugfix site or not,
> >>>>> but I
> >>>>> tried the new gmx3.3 on an x86-64 machine and an SGI Altix and
> >>>>> got the
> >>>>> following error message on both of them when performing a test
> >>>>> run that
> >>>>> works fine with previous versions:
> >>>>>
> >>>>> Program mdrun_mpi, VERSION 3.3_rc1
> >>>>> Source code file: block_tx.c, line: 74
> >>>>>
> >>>>> Fatal error:
> >>>>> 0: size=0, len=4, rx_count=0
> >>>>>
> >>>>> I don't know if I am doing something wrong or not, but I'm fairly
> >>>>> sure
> >>>>> it's not due to the system.
> >>>>>
> >>>>> David
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>
> >>>> --
> >>>> =======================================|
> >>>> David Bostick |
> >>>> The Scripps Research Institute |
> >>>> Dept. of Molecular Biology, TPC 6 |
> >>>> 10550 N. Torrey Pines Rd. |
> >>>> La Jolla, CA 92037 |
> >>>> =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=|
> >>>> Phone: 858-784-9614 |
> >>>> Fax: 858-784-8688 |
> >>>> Email: dbostick at scripps.edu |
> >>>> Web: http://www.scripps.edu/~dbostick|
> >>>> =======================================|
> >>>>
> >>>> _______________________________________________
> >>>> gmx-developers mailing list
> >>>> gmx-developers at gromacs.org
> >>>> http://www.gromacs.org/mailman/listinfo/gmx-developers
> >>>> Please don't post (un)subscribe requests to the list. Use the
> >>>> www interface or send it to gmx-developers-request at gromacs.org.
> >>>>
> >>>>
> >>>>
> >>>
> >>>
> >>> ---------------------------------------------------
> >>> Dr. Carsten Kutzner
> >>> Max Planck Institute for Biophysical Chemistry
> >>> Theoretical and Computational Biophysics Department
> >>> Am Fassberg 11
> >>> 37077 Goettingen, Germany
> >>> Tel. +49-551-2012313, Fax: +49-551-2012302
> >>> eMail ckutzne at gwdg.de
> >>> http://www.gwdg.de/~ckutzne
> >>>
> >>> _______________________________________________
> >>> gmx-developers mailing list
> >>> gmx-developers at gromacs.org
> >>> http://www.gromacs.org/mailman/listinfo/gmx-developers
> >>> Please don't post (un)subscribe requests to the list. Use the
> >>> www interface or send it to gmx-developers-request at gromacs.org.
> >>>
> >>>
> >>>
> >>
> >> _______________________________________________
> >> gmx-developers mailing list
> >> gmx-developers at gromacs.org
> >> http://www.gromacs.org/mailman/listinfo/gmx-developers
> >> Please don't post (un)subscribe requests to the list. Use the
> >> www interface or send it to gmx-developers-request at gromacs.org.
> >>
> >>
> >
> > --
> > =======================================|
> > David Bostick |
> > The Scripps Research Institute |
> > Dept. of Molecular Biology, TPC 6 |
> > 10550 N. Torrey Pines Rd. |
> > La Jolla, CA 92037 |
> > =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=|
> > Phone: 858-784-9614 |
> > Fax: 858-784-8688 |
> > Email: dbostick at scripps.edu |
> > Web: http://www.scripps.edu/~dbostick|
> > =======================================|
> >
> > _______________________________________________
> > gmx-developers mailing list
> > gmx-developers at gromacs.org
> > http://www.gromacs.org/mailman/listinfo/gmx-developers
> > Please don't post (un)subscribe requests to the list. Use the
> > www interface or send it to gmx-developers-request at gromacs.org.
> >
> >
>
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>
--
=======================================|
David Bostick |
The Scripps Research Institute |
Dept. of Molecular Biology, TPC 6 |
10550 N. Torrey Pines Rd. |
La Jolla, CA 92037 |
=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=|
Phone: 858-784-9614 |
Fax: 858-784-8688 |
Email: dbostick at scripps.edu |
Web: http://www.scripps.edu/~dbostick|
=======================================|
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