[gmx-developers] protein out of the box

Tsjerk Wassenaar tsjerkw at gmail.com
Wed Mar 14 08:13:58 CET 2007

Kan Kan,

Read Chapter 3 of the manual, concerning periodic boundary conditions
and read the archives of this user list (www.gromacs.org, search using
"periodic boundary conditions"). You're the second this week with this
question, where yours is not as well phrased as the previous one. It
may be to your benefit to also read


On 3/14/07, kan kan <vijayibt at yahoo.co.in> wrote:
> My protein goes out my box which is of size 166 cubic nm .i can proceed my
> work with is ? is there any way to bring my protein into the box.
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Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623

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