[gmx-developers] PQR support for pdb2gmx

Martin Höfling martin.hoefling at gmx.de
Fri Sep 28 10:12:50 CEST 2007


Am Mittwoch, 26. September 2007 schrieb hessb at mpip-mainz.mpg.de:
> Ah, so your original mail was unclear.
> You said "allowing to write",
> but I guess you meant "allowing to read".

Hmm, it think "write" should be correct. 

Basically, the following should be accomplished:

mystruct.pdb  -----(select gromacs ff)----->mystruct.pqr

i modified pdb2gmx for this, to do this directly but

mystruct.pdb + dummy.mpd ---(select gromacs ff)--> dummy.tpr
dummy.tpr  ------(usage of editconf's -grasp option) ----->mystruct.pqr

So is this what you thought too?

Best
	Martin

-- 
Der Weisswurstaequator verlaeuft exakt entlang der Donau. Suedlich
davon ist ein schoenes Land mit freundlichen Menschen und gutem Essen.
Noerdlich davon beginnt der Strand und es gibt Fisch. Leute wohnen da
auch. [O.G. Schwenk, de.etc.sprache.deutsch, 27.1.2000]



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