[gmx-developers] problem with cvs version compilation

Atte Sillanpää atte.sillanpaa at csc.fi
Thu Jun 12 13:21:37 CEST 2008


I just checked out the latest version of the 4-beta code but it does not 
compile. Configure goes through but make crashes in the beginning with:

> make
Making all in include
make[1]: Entering directory `/fs/metawrk/asillanp/gmx/include'
Making all in .
make[2]: Entering directory `/fs/metawrk/asillanp/gmx/include'
make[2]: *** No rule to make target `x2top_qgen.h', needed by `all-am'.  Stop.
make[2]: Leaving directory `/fs/metawrk/asillanp/gmx/include'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/fs/metawrk/asillanp/gmx/include'
make: *** [all-recursive] Error 1

Along the lines in May's thread (http://www.gromacs.org/pipermail/gmx-developers/2008-May/002511.html) I deleted all references to x2top from the Makefile.am and now it compiles but all of it doesn't install:

make[2]: Entering directory `/fs/local/linux26_x86_64/appl/chem/gromacs/gromacs-3.99.4/gmx/src/kernel'
source='add_par.c' object='add_par.lo' libtool=yes \
DEPDIR=.deps depmode=none /bin/sh ../../config/depcomp \
/bin/sh ../../libtool --mode=compile --tag=CC cc -DHAVE_CONFIG_H -I. -I. -I../../src -I/usr/X11R6/include -I/usr/include/libxml2 -I../../include -DGMXLIBDIR=\"/v/linux26_x86_64/appl/chem/gromacs/3.99.3/share/top\" -I/v/linux26_x86_64/appl/opt/fftw/fftw-3.1.2/include  -fast -pc 32 -c -o add_par.lo add_par.c
 cc -DHAVE_CONFIG_H -I. -I. -I../../src -I/usr/X11R6/include -I/usr/include/libxml2 -I../../include -DGMXLIBDIR=\"/v/linux26_x86_64/appl/chem/gromacs/3.99.3/share/top\" -I/v/linux26_x86_64/appl/opt/fftw/fftw-3.1.2/include -fast -pc 32 -c add_par.c -o add_par.o
PGC-F-0206-Can't find include file gpp_atomtype.h (./toputil.h: 41)
PGC/x86-64 Linux 7.0-7: compilation aborted
make[2]: *** [add_par.lo] Error 1

I think that x2top would be useful and as it has compiled before, maybe there is something incompatible in the sources? Any help is greatly appreciated.



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