[gmx-developers] problem with cvs version compilation

[David van der Spoel]

Atte Sillanpää wrote:
> Hi,
> 
> I just checked out the latest version of the 4-beta code but it does not 
> compile. Configure goes through but make crashes in the beginning with:
> 
>> make
> Making all in include
> make[1]: Entering directory `/fs/metawrk/asillanp/gmx/include'
> Making all in .
> make[2]: Entering directory `/fs/metawrk/asillanp/gmx/include'
> make[2]: *** No rule to make target `x2top_qgen.h', needed by `all-am'.  
> Stop.
> make[2]: Leaving directory `/fs/metawrk/asillanp/gmx/include'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/fs/metawrk/asillanp/gmx/include'
> make: *** [all-recursive] Error 1
> 
> 
> Along the lines in May's thread 
> (http://www.gromacs.org/pipermail/gmx-developers/2008-May/002511.html) I 
> deleted all references to x2top from the Makefile.am and now it compiles 
> but all of it doesn't install:
> 
> ...
> make[2]: Entering directory 
> `/fs/local/linux26_x86_64/appl/chem/gromacs/gromacs-3.99.4/gmx/src/kernel'
> source='add_par.c' object='add_par.lo' libtool=yes \
> DEPDIR=.deps depmode=none /bin/sh ../../config/depcomp \
> /bin/sh ../../libtool --mode=compile --tag=CC cc -DHAVE_CONFIG_H -I. -I. 
> -I../../src -I/usr/X11R6/include -I/usr/include/libxml2 -I../../include 
> -DGMXLIBDIR=\"/v/linux26_x86_64/appl/chem/gromacs/3.99.3/share/top\" 
> -I/v/linux26_x86_64/appl/opt/fftw/fftw-3.1.2/include  -fast -pc 32 -c -o 
> add_par.lo add_par.c
> cc -DHAVE_CONFIG_H -I. -I. -I../../src -I/usr/X11R6/include 
> -I/usr/include/libxml2 -I../../include 
> -DGMXLIBDIR=\"/v/linux26_x86_64/appl/chem/gromacs/3.99.3/share/top\" 
> -I/v/linux26_x86_64/appl/opt/fftw/fftw-3.1.2/include -fast -pc 32 -c 
> add_par.c -o add_par.o
> PGC-F-0206-Can't find include file gpp_atomtype.h (./toputil.h: 41)
> PGC/x86-64 Linux 7.0-7: compilation aborted
> make[2]: *** [add_par.lo] Error 1
> ...
> 
> I think that x2top would be useful and as it has compiled before, maybe 
> there is something incompatible in the sources? Any help is greatly 
> appreciated.

We are in the middle of a hackathon. Stuff will improve towards the end 
of the day.
> 
> Cheers,
> 
> Atte
> 
> 
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-- 
David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se