[gmx-developers] force field files for amber ff03* and ff99sb* for new release
Robert Best
rbb24 at cam.ac.uk
Thu Aug 5 14:05:54 CEST 2010
Since the Amber force fields will be part of the new release of gromacs
(4.5), I'd like to suggest including the modifications which I've made
(ff03-star, ff99sb-star). These have now been the subject of three
publications (see below), and seem to offer significant improvements in
folding proteins from different structural classes. Could you let me know
whether/how I can contribute these?
Regards
Robert Best
@ARTICLE{best-2009-2,
author = "Robert B. Best and Gerhard Hummer",
title = "Optimized molecular dynamics force fields applied
to the helix-coil transition of polypeptides",
journal = "J. Phys. Chem. B",
volume = 113,
pages = "9004-9015",
year = 2009 }
@ARTICLE{best-2010-2,
author = "Robert B. Best and Jeetain Mittal",
title = "{Balance between $\alpha$ and $\beta$ structures in
\textit{ab initio}
protein folding}",
journal = "J. Phys. Chem. B",
volume = 114,
pages = "8790-8798",
year = 2010 }
@ARTICLE{mittal-2010-2,
author = "Jeetain Mittal and Robert B. Best",
title = "Tackling force field bias in protein folding simulations:
folding of {Villin
HP35 and Pin WW} domains in explicit water",
journal = "Biophys. J.",
pages = "L26-L28",
volume = 99,
year = 2010 }
--
Robert Best
Royal Society University Research Fellow
Department of Chemistry
Lensfield Road, Cambridge CB2 1EW
http://www.ch.cam.ac.uk/staff/rbb.html
Tel: +44-(0)1223-336470 | Fax: +44-(0)1223-336362
More information about the gromacs.org_gmx-developers
mailing list